BEDTools 2.30.0-GCC-10.3.0

There is a newer install of BEDTools

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.

Accessing BEDTools 2.30.0-GCC-10.3.0

To load the module for BEDTools 2.30.0-GCC-10.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load BEDTools/2.30.0-GCC-10.3.0

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the BEDTools website.

Dependencies

This version of BEDTools has a direct dependency on: BamTools/2.5.2-GCC-10.3.0 bzip2/1.0.8-GCCcore-10.3.0 GCC/10.3.0 XZ/5.2.5-GCCcore-10.3.0 zlib/1.2.11-GCCcore-10.3.0

Required By

This version of BEDTools is a direct dependent of: rmats2sashimiplot/2.0.4-foss-2021a

Other Versions

These versions of BEDTools are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 17th March 2022