PharmacoGx 2.4.0-foss-2021aContains a set of functions to perform large-scale analysis of pharmaco-genomic data.
Accessing PharmacoGx 2.4.0-foss-2021a
To load the module for PharmacoGx 2.4.0-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load PharmacoGx/2.4.0-foss-2021a
BEAR Apps Version
EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- CoreGx 1.4.2
- magicaxis 2.2.1
- mapproj 1.2.7
- MultiAssayExperiment 1.18.0
- PharmacoGx 2.4.0
- piano 2.8.0
For more information visit the PharmacoGx website.
This version of PharmacoGx has a direct dependency on: foss/2021a R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0
This version of PharmacoGx is a direct dependent of: BEAR-R-bio/2021a-foss-2021a-R-4.1.0
Last modified on 12th November 2021