BEAR-R-bio 2021a-foss-2021a-R-4.1.0

There is a newer version of BEAR-R-bio

This module provides access to several R bio libraries. It is primarily available for use with RStudio in the BlueBEAR Portal.

Accessing BEAR-R-bio 2021a-foss-2021a-R-4.1.0

To load the module for BEAR-R-bio 2021a-foss-2021a-R-4.1.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load BEAR-R-bio/2021a-foss-2021a-R-4.1.0

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Dependencies

This version of BEAR-R-bio has a direct dependency on: apcluster/1.4.8-foss-2021a docstring/1.0.0-foss-2021a EnhancedVolcano/20211028-foss-2021a-R-4.1.0 foss/2021a GeomxTools/1.0.0-foss-2021a-R-4.1.0 ggrastr/1.0.1-foss-2021a-R-4.1.0 iClusterPlus/1.28.0-foss-2021a log4r/0.4.2-foss-2021a PharmacoGx/2.4.0-foss-2021a phenoptrReports/0.3.0-foss-2021a-R-4.1.0 R/4.1.0-foss-2021a R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0 rcdk/3.6.0-foss-2021a shinycssloaders/1.0.0-foss-2021a SNFtool/2.3.1-foss-2021a survcomp/1.42.0-foss-2021a

Other Versions

These versions of BEAR-R-bio are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 8th November 2021