EnhancedVolcano 20211028-foss-2021a-R-4.1.0Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.
Accessing EnhancedVolcano 20211028-foss-2021a-R-4.1.0
To load the module for EnhancedVolcano 20211028-foss-2021a-R-4.1.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load EnhancedVolcano/20211028-foss-2021a-R-4.1.0
BEAR Apps Version
EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- EnhancedVolcano 20211028
For more information visit the EnhancedVolcano website.
This version of EnhancedVolcano has a direct dependency on: foss/2021a R/4.1.0-foss-2021a
This version of EnhancedVolcano is a direct dependent of: BEAR-R-bio/2021a-foss-2021a-R-4.1.0
These versions of EnhancedVolcano are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 8th November 2021