BEAR-R-bio 2022b-foss-2022b-R-4.3.1
This module provides access to several R bio libraries. It is primarily available for use with RStudio in the BEAR Portal.
Accessing BEAR-R-bio 2022b-foss-2022b-R-4.3.1
To load the module for BEAR-R-bio 2022b-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022b
module load BEAR-R-bio/2022b-foss-2022b-R-4.3.1
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Dependencies
This version of BEAR-R-bio has a direct dependency on: celldex/1.10.1-foss-2022b-R-4.3.1 faahKO/1.40.0-foss-2022b-R-4.3.1 foss/2022b ggfortify/0.4.16-foss-2022b-R-4.3.1 iRF/3.0.0-foss-2022b-R-4.3.1 maftools/2.16.0-foss-2022b-R-4.3.1 MAST/1.26.0-foss-2022b-R-4.3.1 MOFA2/1.10.0-foss-2022b-R-4.3.1 mofapy2/0.7.0-foss-2022b monocle/2.28.0-foss-2022b-R-4.3.1 msPurity/1.26.0-foss-2022b-R-4.3.1 MSstats/4.8.6-foss-2022b-R-4.3.1 ottr/1.4.0-foss-2022b-R-4.3.1 pandaR/1.32.0-foss-2022b-R-4.3.1 R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1 RUVSeq/1.34.0-foss-2022b-R-4.3.1 smotefamily/1.3.1-foss-2022b-R-4.3.1
Other Versions
These versions of BEAR-R-bio are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 25th July 2023