BEAR-R-bio 2022b-foss-2022b-R-4.3.1

This module provides access to several R bio libraries. It is primarily available for use with RStudio in the BlueBEAR Portal.

Accessing BEAR-R-bio 2022b-foss-2022b-R-4.3.1

To load the module for BEAR-R-bio 2022b-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load BEAR-R-bio/2022b-foss-2022b-R-4.3.1

BEAR Apps Version

2022b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Dependencies

This version of BEAR-R-bio has a direct dependency on: celldex/1.10.1-foss-2022b-R-4.3.1 faahKO/1.40.0-foss-2022b-R-4.3.1 foss/2022b ggfortify/0.4.16-foss-2022b-R-4.3.1 iRF/3.0.0-foss-2022b-R-4.3.1 maftools/2.16.0-foss-2022b-R-4.3.1 MAST/1.26.0-foss-2022b-R-4.3.1 MOFA2/1.10.0-foss-2022b-R-4.3.1 mofapy2/0.7.0-foss-2022b monocle/2.28.0-foss-2022b-R-4.3.1 msPurity/1.26.0-foss-2022b-R-4.3.1 MSstats/4.8.6-foss-2022b-R-4.3.1 ottr/1.4.0-foss-2022b-R-4.3.1 pandaR/1.32.0-foss-2022b-R-4.3.1 R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1 smotefamily/1.3.1-foss-2022b-R-4.3.1

Other Versions

These versions of BEAR-R-bio are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th July 2023