digitalDLSorteR 1.0.1-foss-2022b-R-4.3.1

Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input.

Accessing digitalDLSorteR 1.0.1-foss-2022b-R-4.3.1

To load the module for digitalDLSorteR 1.0.1-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load digitalDLSorteR/1.0.1-foss-2022b-R-4.3.1

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • config 0.3.2
  • digitalDLSorteR 1.0.1
  • grr 0.9.5
  • keras 2.7.0
  • softImpute-1.4-1
  • tensorflow 2.7.0
  • tfautograph 0.3.2
  • tfruns 1.5.3
  • zinbwave 1.22.0

More Information

For more information visit the digitalDLSorteR website.

Dependencies

This version of digitalDLSorteR has a direct dependency on: foss/2022b Python/3.10.8-GCCcore-12.2.0 R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1

Required By

This version of digitalDLSorteR is a direct dependent of: BEAR-R-bio/2022b-foss-2022b-R-4.3.1

Last modified on 7th May 2024