BEAR-R-bio 2021b-foss-2021b-R-4.2.0

There is a newer install of BEAR-R-bio

This module provides access to several R bio libraries. It is primarily available for use with RStudio in the BEAR Portal.

Accessing BEAR-R-bio 2021b-foss-2021b-R-4.2.0

To load the module for BEAR-R-bio 2021b-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load BEAR-R-bio/2021b-foss-2021b-R-4.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Dependencies

This version of BEAR-R-bio has a direct dependency on: CellChat/1.6.0-foss-2021b-R-4.2.0 celldex/1.6.0-foss-2021b-R-4.2.0 clusterProfiler/4.4.4-foss-2021b-R-4.2.0 cyCombine/0.2.15-foss-2021b-R-4.2.0 faahKO/1.36.0-foss-2021b-R-4.2.0 foss/2021b ggfortify/0.4.14-foss-2021b-R-4.2.0 iRF/3.0.0-foss-2021b-R-4.2.0 maftools/2.12.0-foss-2021b-R-4.2.0 monocle/2.24.1-foss-2021b-R-4.2.0 msPurity/1.22.0-foss-2021b-R-4.2.0 MSstats/4.4.1-foss-2021b-R-4.2.0 nichenetr/20220911-foss-2021b-R-4.2.0 ottr/1.2.0-foss-2021b-R-4.2.0 pandaR/1.28.0-foss-2021b-R-4.2.0 phateR/1.0.7-foss-2021b-R-4.2.0 R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0 SCENIC/20220502-foss-2021b-R-4.2.0 showtext/0.9-6-foss-2021b-R-4.2.0 SpaTalk/1.0-foss-2021b-R-4.2.0

Other Versions

These versions of BEAR-R-bio are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 7th July 2022