BEAR Applications

monocle 2.24.1-foss-2021b-R-4.2.0

There is a newer version of monocle

The monocle package provides a toolkit for analyzing single cell gene expression experiments. This vignette provides an overview of a single cell RNA-Seq analysis workflow with Monocle

Accessing monocle 2.24.1-foss-2021b-R-4.2.0

To load the module for monocle 2.24.1-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load monocle/2.24.1-foss-2021b-R-4.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

• biocViews 1.64.1
• DDRTree 0.1.5
• HSMMSingleCell 1.16.0
• leidenbase 0.1.11
• monocle 2.24.1

More Information

For more information visit the monocle website.

Dependencies

This version of monocle has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of monocle is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0

Other Versions

These versions of monocle are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th August 2022