SCENIC 20220502-foss-2021b-R-4.2.0

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

Accessing SCENIC 20220502-foss-2021b-R-4.2.0

To load the module for SCENIC 20220502-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load SCENIC/20220502-foss-2021b-R-4.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • SCENIC 20220502

More Information

For more information visit the SCENIC website.

Dependencies

This version of SCENIC has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of SCENIC is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0

Last modified on 31st March 2023