celldex 1.6.0-foss-2021b-R-4.2.0

Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.

Accessing celldex 1.6.0-foss-2021b-R-4.2.0

To load the module for celldex 1.6.0-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load celldex/1.6.0-foss-2021b-R-4.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • celldex 1.6.0

More Information

For more information visit the celldex website.

Dependencies

This version of celldex has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Required By

This version of celldex is a direct dependent of: BEAR-R-bio/2021b-foss-2021b-R-4.2.0

Last modified on 13th October 2022