demultiplex 1.2.2-foss-2021a

Versatile NGS demultiplexer with the following features: Support for FASTA and FASTQ files.Support for gzip and bzip2 compressed files. Support for multiple reads per fragment, e.g., paired-end.

Accessing demultiplex 1.2.2-foss-2021a

To load the module for demultiplex 1.2.2-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load demultiplex/1.2.2-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • demultiplex 1.2.2
  • dict-trie-1.0.1
  • fastools 1.1.4
  • jit_open 1.0.2
  • python-Levenshtein-0.12.2
  • tssv 1.1.2
  • xopen 1.2.1

More Information

For more information visit the demultiplex website.

Dependencies

This version of demultiplex has a direct dependency on: Biopython/1.79-foss-2021a foss/2021a Python/3.9.5-GCCcore-10.3.0 python-isal/0.11.0-GCCcore-10.3.0

Last modified on 7th December 2021