scVelo 0.2.4-foss-2021ascVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling.
Accessing scVelo 0.2.4-foss-2021a
To load the module for scVelo 0.2.4-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load scVelo/0.2.4-foss-2021a
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- scVelo 0.2.4
For more information visit the scVelo website.
This version of scVelo has a direct dependency on: foss/2021a freetype/2.10.4-GCCcore-10.3.0 h5py/3.2.1-foss-2021a libpng/1.6.37-GCCcore-10.3.0 loompy/3.0.7-foss-2021a matplotlib/3.4.2-foss-2021a networkx/2.5.1-foss-2021a numba/0.53.1-foss-2021a PyTables/3.6.1-foss-2021a Python/3.9.5-GCCcore-10.3.0 scanpy/1.8.1-foss-2021a scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a Seaborn/0.11.2-foss-2021a statsmodels/0.12.2-foss-2021a Tkinter/3.9.5-GCCcore-10.3.0 tqdm/4.61.2-GCCcore-10.3.0 typing-extensions/184.108.40.206-GCCcore-10.3.0
This version of scVelo is a direct dependent of: CellRank/1.5.1-foss-2021a
Last modified on 20th May 2022