CellRank 1.5.1-foss-2021a

CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data. It contains two main modules: kernels compute cell-cell transition probabilities and estimators generate hypothesis based on these.

Accessing CellRank 1.5.1-foss-2021a

To load the module for CellRank 1.5.1-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CellRank/1.5.1-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-haswellEL8-icelake

Extensions

  • CellRank 1.5.1
  • docrep 0.3.2
  • joblib 1.1.0
  • progressbar2 3.55.0
  • pygam 0.8.0
  • pygpcca 1.0.3
  • python-utils-3.2.2
  • wrapt 1.14.1

More Information

For more information visit the CellRank website.

Dependencies

This version of CellRank has a direct dependency on: foss/2021a PETSc/3.15.1-foss-2021a petsc4py/3.15.0-foss-2021a Python/3.9.5-GCCcore-10.3.0 scikit-learn/0.24.2-foss-2021a scVelo/0.2.4-foss-2021a SLEPc/3.15.1-foss-2021a slepc4py/3.15.1-foss-2021a typing-extensions/3.10.0.0-GCCcore-10.3.0

Last modified on 20th May 2022