deepBlink 0.1.2-foss-2021a

Threshold independent detection and localization of diffraction-limited spots.

Accessing deepBlink 0.1.2-foss-2021a

To load the module for deepBlink 0.1.2-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load deepBlink/0.1.2-foss-2021a

There is a GPU enabled version of this module: deepBlink 0.1.2-foss-2021a-CUDA-11.3.1

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the deepBlink website.

Dependencies

This version of deepBlink has a direct dependency on: foss/2021a matplotlib/3.4.2-foss-2021a Python/3.9.5-GCCcore-10.3.0 PyYAML/5.4.1-GCCcore-10.3.0 scikit-image/0.18.3-foss-2021a SciPy-bundle/2021.05-foss-2021a TensorFlow/2.6.0-foss-2021a

Other Versions

These versions of deepBlink are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version

Last modified on 27th January 2022