velocyto 0.17.17-foss-2021a

Velocyto is a library for the analysis of RNA velocity.

Accessing velocyto 0.17.17-foss-2021a

To load the module for velocyto 0.17.17-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load velocyto/0.17.17-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • loompy 3.0.6
  • numpy_groupies 0.9.13
  • velocyto 0.17.17

More Information

For more information visit the velocyto website.

Dependencies

This version of velocyto has a direct dependency on: foss/2021a h5py/3.2.1-foss-2021a matplotlib/3.4.2-foss-2021a numba/0.53.1-foss-2021a Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a

Other Versions

These versions of velocyto are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.17.17-foss-2019a-Python-3.7.2 2019a

Last modified on 11th May 2022