There is a newer version of velocytoVelocyto is a library for the analysis of RNA velocity.
Accessing velocyto 0.17.17-foss-2019a-Python-3.7.2
To load the module for velocyto 0.17.17-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load velocyto/0.17.17-foss-2019a-Python-3.7.2
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- loompy 3.0.6
- velocyto 0.17.17
For more information visit the velocyto website.
This version of velocyto has a direct dependency on: foss/2019a h5py/2.10.0-foss-2019a matplotlib/3.0.3-foss-2019a-Python-3.7.2 numba/0.43.1-foss-2019a Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0 scikit-learn/0.20.3-foss-2019a
These versions of velocyto are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 12th December 2019