Accessing Pysam 0.15.2-foss-2019a
To load the module for Pysam 0.15.2-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Pysam/0.15.2-foss-2019a
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the Pysam website.
This version of Pysam is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of Pysam.
This version of Pysam is a direct dependent of: ALFA/1.1.1-foss-2019a-Python-3.7.2 MMSplice/1.0.3-foss-2019a-Python-3.7.2 pybedtools/0.8.0-foss-2019a rMATS/4.0.2-foss-2019a-Python-2.7.15 SpliceAI/1.3-foss-2019a-Python-3.7.2 velocyto/0.17.17-foss-2019a-Python-3.7.2 WhatsHap/0.18-foss-2019a-Python-3.7.2
Last modified on 22nd July 2019