Pysam 0.15.3-GCC-8.3.0

There is a newer install of Pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Accessing Pysam 0.15.3-GCC-8.3.0

To load the module for Pysam 0.15.3-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Pysam/0.15.3-GCC-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Pysam website.

Dependencies

This version of Pysam has a direct dependency on: cURL/7.66.0-GCCcore-8.3.0 GCC/8.3.0 ncurses/6.1-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0 Python/2.7.16-GCCcore-8.3.0 XZ/5.2.4-GCCcore-8.3.0

This version of Pysam is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of Pysam.

Required By

This version of Pysam is a direct dependent of: cgat/0.6.5-foss-2019b-Python-3.7.4 HTSeq/0.12.4-foss-2019b-Python-3.7.4 HTSeq/0.12.4-foss-2019b-Python-2.7.16 LongQC/1.0-foss-2019b-Python-3.7.4 pybedtools/0.8.1-foss-2019b pycoQC/2.5.0.21-foss-2019b-Python-3.7.4 pyDNase/0.3.0-foss-2019b-Python-3.7.4

Other Versions

These versions of Pysam are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th April 2020