Pysam 0.15.1-foss-2018b-Python-2.7.15

Deprecated: Use of this version of Pysam is deprecated. More information on our Applications Support and Retention Policy.

There is a newer install of Pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Accessing Pysam 0.15.1-foss-2018b-Python-2.7.15

To load the module for Pysam 0.15.1-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Pysam/0.15.1-foss-2018b-Python-2.7.15

BEAR Apps Version




The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Pysam website.


This version of Pysam has a direct dependency on: cURL/7.60.0-GCCcore-7.3.0 foss/2018b ncurses/6.1-GCCcore-7.3.0 Python/2.7.15-foss-2018b

Required By

This version of Pysam is a direct dependent of: HTSeq/0.11.0-foss-2018b-Python-2.7.15 OptiType/1.3.2-foss-2018b-Python-2.7.15 transIndel/7098bd6-foss-2018b-Python-2.7.15-ScanNeo transIndel/7098bd6-foss-2018b-Python-2.7.15 TRAPeS/e65bb7b-foss-2018b-Python-2.7.15

Other Versions

These versions of Pysam are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th June 2019