Deprecated: Use of this version of transIndel is deprecated. More information on our Applications Support and Retention Policy.transIndel is used to detect indels (insertions and deletions) from DNA-seq or RNA-seq data by parsing chimiric alignments from BWA-MEM.
Accessing transIndel 7098bd6-foss-2018b-Python-2.7.15-ScanNeo
To load the module for transIndel 7098bd6-foss-2018b-Python-2.7.15-ScanNeo please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load transIndel/7098bd6-foss-2018b-Python-2.7.15-ScanNeo
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the transIndel website.
Last modified on 16th August 2019