MMSplice 1.0.3-foss-2019a-Python-3.7.2

Variant effect predictions on splicing

Accessing MMSplice 1.0.3-foss-2019a-Python-3.7.2

To load the module for MMSplice 1.0.3-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load MMSplice/1.0.3-foss-2019a-Python-3.7.2

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • argcomplete 1.11.1
  • argh 0.26.2
  • arrow 0.15.5
  • binaryornot 0.4.4
  • colorlog 4.1.0
  • concise 0.6.8
  • cookiecutter 1.7.0
  • deprecation 2.0.7
  • descartes 1.1.0
  • gffutils 0.10.1
  • gtfparse 1.2.0
  • importlib_metadata 1.5.0
  • jinja2-time-0.2.0
  • kipoi 0.6.25
  • kipoi_conda 0.2.2
  • kipoi_utils 0.3.8
  • kipoiseq 0.2.7
  • MMSplice 1.0.3
  • natsort 7.0.1
  • ncls 0.0.53
  • poyo 0.5.0
  • pyfaidx 0.5.8
  • pyranges 0.0.76
  • pyrle 0.0.30
  • related 0.7.2
  • related 0.7.2
  • scikit-learn-0.19.2
  • Shapely 1.7.0
  • simplejson 3.17.0
  • sorted_nearest 0.0.31
  • tinydb 3.15.2
  • whichcraft 0.6.1
  • zipp 0.6.0

More Information

For more information visit the MMSplice website.

Dependencies

This version of MMSplice has a direct dependency on: foss/2019a GEOS/3.7.2-foss-2019a-Python-3.7.2 Keras/2.2.4-foss-2019a-Python-3.7.2 matplotlib/3.0.3-foss-2019a-Python-3.7.2 pybedtools/0.8.0-foss-2019a Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0 tqdm/4.33.0-foss-2019a-Python-3.7.2

Last modified on 16th March 2020