prodigal 2.6.3-GCCcore-10.3.0

There is a newer version of prodigal

Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.

Accessing prodigal 2.6.3-GCCcore-10.3.0

To load the module for prodigal 2.6.3-GCCcore-10.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load prodigal/2.6.3-GCCcore-10.3.0

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the prodigal website.

Dependencies

This version of prodigal has a direct dependency on: GCCcore/10.3.0

Required By

This version of prodigal is a direct dependent of: CheckM/1.1.3-foss-2021a GTDB-Tk/2.0.0-foss-2021a

Other Versions

These versions of prodigal are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th January 2022