CheckM 1.1.3-foss-2021a

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.

Accessing CheckM 1.1.3-foss-2021a

To load the module for CheckM 1.1.3-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CheckM/1.1.3-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the CheckM website.

Dependencies

This version of CheckM has a direct dependency on: DendroPy/4.5.2-GCCcore-10.3.0 foss/2021a HMMER/3.3.2-gompi-2021a matplotlib/3.4.2-foss-2021a pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-10.3.0 Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 SciPy-bundle/2021.05-foss-2021a

Last modified on 5th January 2022