GTDB-Tk 2.0.0-foss-2021a

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Accessing GTDB-Tk 2.0.0-foss-2021a

To load the module for GTDB-Tk 2.0.0-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load GTDB-Tk/2.0.0-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the GTDB-Tk website.

Dependencies

This version of GTDB-Tk has a direct dependency on: DendroPy/4.5.2-GCCcore-10.3.0 FastANI/1.33-GCC-10.3.0 FastTree/2.1.11-GCCcore-10.3.0 foss/2021a HMMER/3.3.2-gompi-2021a Mash/2.3-GCC-10.3.0 matplotlib/3.4.2-foss-2021a pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 tqdm/4.61.2-GCCcore-10.3.0

Last modified on 22nd April 2022