EPACTS 3.3.2-foss-2021a

EPACTS is a versatile software pipeline to perform various statistical tests for identifying genome-wide association from sequence data through a user-friendly interface, both to scientific analysts and to method developers.

Accessing EPACTS 3.3.2-foss-2021a

To load the module for EPACTS 3.3.2-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load EPACTS/3.3.2-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the EPACTS website.

Dependencies

This version of EPACTS has a direct dependency on: foss/2021a Ghostscript/9.54.0-GCCcore-10.3.0 gnuplot/5.4.2-GCCcore-10.3.0 groff/1.22.4-GCCcore-10.3.0 R/4.1.0-foss-2021a zlib/1.2.11-GCCcore-10.3.0

Last modified on 1st December 2022