BEAR Applications

dcm2niix 1.0.20220720-GCCcore-10.3.0

There is a newer version of dcm2niix

dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format.

Accessing dcm2niix 1.0.20220720-GCCcore-10.3.0

To load the module for dcm2niix 1.0.20220720-GCCcore-10.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load dcm2niix/1.0.20220720-GCCcore-10.3.0

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the dcm2niix website.

Dependencies

This version of dcm2niix has a direct dependency on: CharLS/2.3.4-GCCcore-10.3.0 GCCcore/10.3.0 OpenJPEG/2.4.0-GCCcore-10.3.0 pigz/2.6-GCCcore-10.3.0 zlib/1.2.11-GCCcore-10.3.0

Other Versions

These versions of dcm2niix are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd December 2022