InterProScan 5.55-88.0-foss-2021a

There is a newer version of InterProScan

InterProScan can be used to run the scanning algorithms from the InterPro database in an integrated way. Sequences are submitted in FASTA format. Matches are then calculated against all of the required member database's signatures and the results are then output in a variety of formats.

Accessing InterProScan 5.55-88.0-foss-2021a

To load the module for InterProScan 5.55-88.0-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load InterProScan/5.55-88.0-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-haswellEL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the InterProScan website.

Dependencies

This version of InterProScan has a direct dependency on: foss/2021a Java/11 libgd/2.3.1-GCCcore-10.3.0 Perl/5.32.1-GCCcore-10.3.0 pftoolsV3/3.2.11-foss-2021a Python/3.9.5-GCCcore-10.3.0

Other Versions

These versions of InterProScan are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 16th March 2023