Remora 0.1.2-foss-2021aMethylation/modified base calling separated from basecalling. Remora primarily provides an API to call modified bases for basecaller programs such as Bonito. Remora also provides the tools to prepare datasets, train modified base models and run simple inference.
Accessing Remora 0.1.2-foss-2021a
To load the module for Remora 0.1.2-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Remora/0.1.2-foss-2021a
BEAR Apps Version
EL8-cascadelake — EL8-haswell — EL8-icelake
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- onnx 1.10.0
- onnxruntime 1.10.0
- ont_remora 0.1.2
- thop 0.0.31.post2005241907
For more information visit the Remora website.
This version of Remora has a direct dependency on: flatbuffers-python/2.0-GCCcore-10.3.0 foss/2021a Python/3.9.5-GCCcore-10.3.0 PyTorch/1.10.0-foss-2021a scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a tqdm/4.61.2-GCCcore-10.3.0
This version of Remora is a direct dependent of: Megalodon/2.4.2-foss-2021a
Last modified on 10th February 2022