BEAR Applications

HH-suite 3.3.0-gompi-2021a

There is a newer version of HH-suite

The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

Accessing HH-suite 3.3.0-gompi-2021a

To load the module for HH-suite 3.3.0-gompi-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load HH-suite/3.3.0-gompi-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the HH-suite website.

Dependencies

This version of HH-suite has a direct dependency on: gompi/2021a Perl/5.32.1-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0

Required By

This version of HH-suite is a direct dependent of: AlphaFold/2.1.1-foss-2021a AlphaFold/2.1.1-foss-2021a-CUDA-11.3.1 AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1

Other Versions

These versions of HH-suite are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 26th November 2021