Xmipp 3.22.07-Helios-foss-2021a-CUDA-11.3.1

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.

Accessing Xmipp 3.22.07-Helios-foss-2021a-CUDA-11.3.1

To load the module for Xmipp 3.22.07-Helios-foss-2021a-CUDA-11.3.1 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Xmipp/3.22.07-Helios-foss-2021a-CUDA-11.3.1

BEAR Apps Version

2021a

Architectures

EL8-haswell (GPUs: NVIDIA P100) — EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30)

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Xmipp website.

Dependencies

This version of Xmipp has a direct dependency on: CUDA/11.3.1 foss/2021a HDF5/1.10.7-gompi-2021a Java/11 libjpeg-turbo/2.0.6-GCCcore-10.3.0 LIBSVM/3.25-GCCcore-10.3.0 LibTIFF/4.2.0-GCCcore-10.3.0 OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib Python/3.9.5-GCCcore-10.3.0 SciPy-bundle/2021.05-foss-2021a SQLite/3.35.4-GCCcore-10.3.0 UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1

Required By

This version of Xmipp is a direct dependent of: Scipion/3.0.12-foss-2021a-CUDA-11.3.1

Last modified on 1st December 2022