Cellpose 0.6.5-foss-2021a-CUDA-11.3.1a generalist algorithm for cellular segmentation
Accessing Cellpose 0.6.5-foss-2021a-CUDA-11.3.1
To load the module for Cellpose 0.6.5-foss-2021a-CUDA-11.3.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Cellpose/0.6.5-foss-2021a-CUDA-11.3.1
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- Cellpose 0.6.5
- natsort 7.1.1
- pyqtgraph 0.12.2
- tifffile 2021.8.8
For more information visit the Cellpose website.
This version of Cellpose has a direct dependency on: CUDA/11.3.1 foss/2021a numba/0.53.1-foss-2021a OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib PyQt5/5.15.4-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 PyTorch/1.9.1-foss-2021a-CUDA-11.3.1-imkl tqdm/4.61.2-GCCcore-10.3.0
Last modified on 11th October 2021