Cellpose 2.2-foss-2022aa generalist algorithm for cellular segmentation
Accessing Cellpose 2.2-foss-2022a
To load the module for Cellpose 2.2-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2022a
module load Cellpose/2.2-foss-2022a
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- Cellpose 2.2
- fastremap 1.13.4
- imagecodecs 2023.1.23
- natsort 8.2.0
- pyqtgraph 0.13.1
- superqt 0.4.0
- tifffile 2023.2.3
For more information visit the Cellpose website.
This version of Cellpose has a direct dependency on: foss/2022a numba/0.56.4-foss-2022a OpenCV/4.6.0-foss-2022a-contrib PyQt5/5.15.5-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a QtPy/2.3.0-GCCcore-11.3.0 tqdm/4.64.0-GCCcore-11.3.0
|Version||BEAR Apps Version|
Last modified on 14th February 2023