foss 2020b

There is a newer version of foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Accessing foss 2020b

To load the module for foss 2020b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load foss/2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the foss website.

Dependencies

This version of foss has a direct dependency on: FFTW/3.3.8-gompi-2020b GCC/10.2.0 OpenBLAS/0.3.12-GCC-10.2.0 OpenMPI/4.0.5-GCC-10.2.0 ScaLAPACK/2.1.0-gompi-2020b

Required By

This version of foss is a direct dependent of: ABSOLUTE/1.0.6-foss-2020b-R-4.0.3 AfterQC/0.9.7-foss-2020b-Python-2.7.18 archive/1.1.2-foss-2020b-R-4.0.3 Arrow/0.17.1-foss-2020b astropy/4.2.1-foss-2020b basemap/1.2.2-foss-2020b BAT/2.8.1-foss-2020b-R-4.0.3 BAT/2.7.1-foss-2020b-R-4.0.3 BAT/2.6.1-foss-2020b-R-4.0.3 BEAR-R-bio/2020b-foss-2020b-R-4.0.3 BiomasaFP/0.3-foss-2020b-R-4.0.3 BIOMASS/2.1.4-foss-2020b-R-4.0.3 Biopython/1.78-foss-2020b bokeh/2.3.1-foss-2020b Cartopy/0.18.0-foss-2020b cell2location/0.05-alpha-foss-2020b Cellpose/0.6.5-foss-2020b clusterProfiler/3.16.1-foss-2020b-R-4.0.3 Compass/20220402-foss-2020b CP2K/8.1-foss-2020b cpl/7.1.4-foss-2020b cryoDRGN/0.3.5-foss-2020b ctffind/4.1.14-foss-2020b dask/2021.4.0-foss-2020b dplyr/1.0.6-foss-2020b-R-4.0.3 eccodes-python/1.1.0-foss-2020b Elmer-FEM/9.0-foss-2020b emcee/3.0.2-foss-2020b ESMF/8.0.1-foss-2020b ESMPy/8.0.1-foss-2020b esoreflex/2.11.5-foss-2020b esorex/3.13.5-foss-2020b espdr/2.3.3-foss-2020b fgeo/1.1.4-foss-2020b-R-4.0.3 Fiona/1.8.19-foss-2020b flowVS/1.22.4-foss-2020b-R-4.0.3 fv/5.5.2-foss-2020b gasgano/2.4.8-foss-2020b GCPy/1.0.3-foss-2020b GDAL/3.2.1-foss-2020b gensim/3.8.3-foss-2020b geopandas/0.9.0-foss-2020b GeoRinex/1.16.1-foss-2020b geoviews/1.9.1-foss-2020b ggrepel/0.9.1-foss-2020b-R-4.0.3 GPArotation/2014.11-1-foss-2020b-R-4.0.3 GROMACS/2021.2-foss-2020b h5py/3.1.0-foss-2020b h5py/2.10.0-foss-2020b harmony/1.0.0-20201009-foss-2020b-R-4.0.3 Hatanaka/2.8.0-foss-2020b holoviews/1.14.3-foss-2020b HPL/2.3-foss-2020b hyperopt/0.2.5-foss-2020b hypervolume/2.0.12-foss-2020b-R-4.0.3 igraph/0.9.1-foss-2020b IOHexperimenter/0.2.9.2-foss-2020b IPO/1.16.0-foss-2020b IRkernel/1.2-foss-2020b-R-4.0.3 iterative-Random-Forest/0.2.5-foss-2020b JASPAR2020/0.99.10-foss-2020b-R-4.0.3 kableExtra/1.3.4-foss-2020b-R-4.0.3 king/2.2.7-foss-2020b LAMMPS/29Oct2020-foss-2020b-kokkos leidenalg/0.8.3-foss-2020b MashMap/20210721-foss-2020b matplotlib/3.3.3-foss-2020b MOFA2/1.0.1-foss-2020b-R-4.0.3 mofapy2/0.5.7-foss-2020b molmod/1.4.5-foss-2020b Monocle3/1.0.0-foss-2020b-R-4.0.3 motifmatchr/1.12.0-foss-2020b-R-4.0.3 msigdbr/7.4.1-foss-2020b MUMPS/5.3.5-foss-2020b-metis mxfold2/0.1.1-foss-2020b-PyTorch-1.7.1 ncdf4/1.17-foss-2020b-R-4.0.3 NCL/6.6.2-foss-2020b netcdf4-python/1.5.5.1-foss-2020b networkx/2.5-foss-2020b nevergrad/0.4.3.post4-foss-2020b numba/0.52.0-foss-2020b numba/0.53.1-foss-2020b openair/2.8-3-foss-2020b-R-4.0.3 OpenCV/4.5.1-foss-2020b-contrib OpenMC/0.12.1-foss-2020b pathos/0.2.7-foss-2020b PLUMED/2.6.2-foss-2020b prepareGenFromBeagle4/20210920-foss-2020b pyfits/3.5-foss-2020b pymap3d/2.7.2-foss-2020b PyMC3/3.11.1-foss-2020b pyproj/3.0.1-foss-2020b pyro-api/0.1.2-foss-2020b pyro-ppl/1.5.2-foss-2020b PyTables/3.6.1-foss-2020b python-cdo/1.5.6-foss-2020b python-igraph/0.9.0-foss-2020b PyTorch/1.7.1-foss-2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3 RELION/3.1.2-foss-2020b request/2.88.1-foss-2020b-nodejs-12.19.0 rgdal/1.5-18-foss-2020b-R-4.0.3 rgeos/0.5-5-foss-2020b-R-4.0.3 RStudio-Server/1.4.1717-foss-2020b-Java-11-R-4.0.3 RStudio-Server/1.3.1093-foss-2020b-Java-11-R-4.0.3 sars/1.3.4-foss-2020b-R-4.0.3 sars/1.3.5-foss-2020b-R-4.0.3 ScaFaCoS/1.0.1-foss-2020b scikit-build/0.11.1-foss-2020b scikit-learn/0.23.2-foss-2020b SciPy-bundle/2020.11-foss-2020b Seaborn/0.11.1-foss-2020b Seurat/4.0.4-foss-2020b-R-4.0.3 Seurat/af2925c-foss-2020b-R-4.0.3 SeuratWrappers/20210730-foss-2020b-R-4.0.3 sf/1.0-0-foss-2020b-R-4.0.3 SHAPEIT4/4.2.1-foss-2020b Signac/1.3.0-foss-2020b-R-4.0.3 Signac/1.2.1-foss-2020b-R-4.0.3-Seurat-af2925c SingCellaR/1.2.0-foss-2020b-R-4.0.3 Spark/3.1.1-foss-2020b statsmodels/0.12.1-foss-2020b strelka/2.9.10-foss-2020b-Python-2.7.18 Taxonstand/2.3-foss-2020b-R-4.0.3 tensorboardX/2.4-foss-2020b-PyTorch-1.7.1 TFBSTools/1.28.0-foss-2020b-R-4.0.3 Theano/1.1.2-foss-2020b-PyMC TIE-GCM/2.0-foss-2020b-Python-2.7.18 Topaz/0.2.4-foss-2020b-PyTorch-1.7.1 torchvision/0.8.2-foss-2020b-PyTorch-1.7.1 TumorDecon/1.1.1-foss-2020b umap-learn/0.4.6-foss-2020b uncertainties/3.1.5-foss-2020b vasprun-xml/1.0.4-foss-2020b visdom/0.1.8.9-foss-2020b VTK/9.0.1-foss-2020b WPS/4.2-foss-2020b-dmpar WRF/4.2.2-foss-2020b-dmpar WRF/4.2.2-foss-2020b-dmpar-vortex WRF/4.2.2-foss-2020b-hydro WRF-Hydro/5.1.1-foss-2020b wxPython/4.1.1-foss-2020b xarray/0.16.2-foss-2020b xESMF/0.3.0-foss-2020b xpa/2.1.20-foss-2020b yaff/1.6.0-foss-2020b

Other Versions

These versions of foss are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 22nd February 2021