rMATS-turbo 4.1.1-foss-2020b

rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net).

Accessing rMATS-turbo 4.1.1-foss-2020b

To load the module for rMATS-turbo 4.1.1-foss-2020b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load rMATS-turbo/4.1.1-foss-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the rMATS-turbo website.

Dependencies

This version of rMATS-turbo has a direct dependency on: BamTools/2.5.1-GCC-10.2.0 foss/2020b GSL/2.6-GCC-10.2.0 Python/3.8.6-GCCcore-10.2.0 SAMtools/1.11-GCC-10.2.0 SciPy-bundle/2020.11-foss-2020b STAR/2.7.6a-GCC-10.2.0

Last modified on 5th May 2023