rMATS-turbo 4.1.1-foss-2020b

rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net).

Accessing rMATS-turbo 4.1.1-foss-2020b

To load the module for rMATS-turbo 4.1.1-foss-2020b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load rMATS-turbo/4.1.1-foss-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the rMATS-turbo website.

Dependencies

This version of rMATS-turbo has a direct dependency on: BamTools/2.5.1-GCC-10.2.0 foss/2020b GSL/2.6-GCC-10.2.0 Python/3.8.6-GCCcore-10.2.0 SAMtools/1.11-GCC-10.2.0 SciPy-bundle/2020.11-foss-2020b STAR/2.7.6a-GCC-10.2.0

Last modified on 5th May 2023