SingCellaR 1.2.0-foss-2020b-R-4.0.3

Description: SingCellaR facilitates standard functionalities necessary for analysis of large and sparse 10x Genomics data, and can be applied to gene expression data sets generated by plate-base protocols such as Smart-Seq2 and TARGET-seq as well as high-throughput droplet-based platforms.

Accessing SingCellaR 1.2.0-foss-2020b-R-4.0.3

To load the module for SingCellaR 1.2.0-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SingCellaR/1.2.0-foss-2020b-R-4.0.3

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • AUCell 1.12.0
  • cccd 1.5
  • crochet 2.3.0
  • LinkedMatrix 1.4.0
  • SingCellaR 1.2.0

More Information

For more information visit the SingCellaR website.

Dependencies

This version of SingCellaR has a direct dependency on: foss/2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3

Last modified on 13th August 2021