msigdbr 7.4.1-foss-2020b

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software.

Accessing msigdbr 7.4.1-foss-2020b

To load the module for msigdbr 7.4.1-foss-2020b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load msigdbr/7.4.1-foss-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • babelgene 21.4
  • msigdbr 7.4.1

More Information

For more information visit the msigdbr website.

Dependencies

This version of msigdbr has a direct dependency on: foss/2020b R/4.0.3-foss-2020b

Last modified on 24th June 2021