strelka 2.9.10-foss-2020b-Python-2.7.18

Strelka2 is a fast and accurate small variant caller optimized for analysis of germline variation in small cohorts and somatic variation in tumor/normal sample pairs.

Accessing strelka 2.9.10-foss-2020b-Python-2.7.18

To load the module for strelka 2.9.10-foss-2020b-Python-2.7.18 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load strelka/2.9.10-foss-2020b-Python-2.7.18

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the strelka website.

Dependencies

This version of strelka has a direct dependency on: Boost/1.74.0-GCC-10.2.0 foss/2020b Python/2.7.18-GCCcore-10.2.0 zlib/1.2.11-GCCcore-10.2.0

Last modified on 27th July 2021