Installed Applications: 2020b and EL8-cascadelake

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2020b or EL8-cascadelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
ABAQUS 2021-hotfix-2117
ABSOLUTE 1.0.6-foss-2020b-R-4.0.3
AfterQC 0.9.7-foss-2020b-Python-2.7.18
alsa-lib 1.2.5.1
ANSYSEM 2021R2-GCCcore-10.2.0
ant 1.10.9-Java-11
archive 1.1.2-foss-2020b-R-4.0.3
archspec 0.1.0-GCCcore-10.2.0
Arrow 0.17.1-foss-2020b
Aspera-CLI 3.9.6.1467.159c5b1
astropy 4.2.1-foss-2020b
ATAT 3_36-iomkl-2020b
ATK 2.36.0-GCCcore-10.2.0
at-spi2-atk 2.38.0-GCCcore-10.2.0
at-spi2-core 2.38.0-GCCcore-10.2.0
Autoconf 2.69-GCCcore-10.2.0
Automake 1.16.2-GCCcore-10.2.0
Autotools 20200321-GCCcore-10.2.0
BamTools 2.5.1-GCC-10.2.0
basemap 1.2.2-foss-2020b
BAT 2.8.1-foss-2020b-R-4.0.3
BAT 2.7.1-foss-2020b-R-4.0.3
BAT 2.6.1-foss-2020b-R-4.0.3
Bazel 3.7.2-GCCcore-10.2.0
BBMap 38.90-GCC-10.2.0
BEAR-R-bio 2020b-foss-2020b-R-4.0.3
BEDTools 2.30.0-GCC-10.2.0
binutils 2.35-GCCcore-10.2.0
binutils 2.35
BiomasaFP 0.3-foss-2020b-R-4.0.3
BIOMASS 2.1.4-foss-2020b-R-4.0.3
Biopython 1.78-foss-2020b
Bison 3.7.1-GCCcore-10.2.0
Bison 3.7.1
Bison 3.5.3
Blosc 1.21.0-GCCcore-10.2.0
BMDExpress2 2.30.0502
BNC 2.12.18-GCCcore-10.2.0
bokeh 2.3.1-foss-2020b
Boost 1.74.0-iccifort-2020.4.304
Boost 1.74.0-GCC-10.2.0
Boost 1.55.0
BuDDy 2.4-GCCcore-10.2.0
bzip2 1.0.8-GCCcore-10.2.0
bzip2 1.0.6
cairo 1.16.0-GCCcore-10.2.0
Cantera 2.5.1-MATLAB-2021b
Cartopy 0.18.0-foss-2020b
CDO 1.9.10-gompi-2020b
cell2location 0.05-alpha-foss-2020b
Cellpose 0.6.5-foss-2020b
CellRanger 6.0.1
Centrifuge 1.0.4-gompi-2020b
CFITSIO 3.49-GCCcore-10.2.0-threads
CFITSIO 3.49-GCCcore-10.2.0
Check 0.15.2-GCCcore-10.2.0
Clang 11.0.1-GCCcore-10.2.0
clusterProfiler 3.16.1-foss-2020b-R-4.0.3
CMake 3.18.4-GCCcore-10.2.0
CP2K 8.1-iomkl-2020b
CP2K 8.1-foss-2020b
cpl 7.1.4-foss-2020b
cryoDRGN 0.3.5-foss-2020b
ctffind 4.1.14-foss-2020b
cURL 7.72.0-GCCcore-10.2.0
dask 2021.4.0-foss-2020b
DB 18.1.40-GCCcore-10.2.0
DBus 1.13.18-GCCcore-10.2.0
dbus-glib 0.110-GCCcore-10.2.0
dill 0.3.3-GCCcore-10.2.0
double-conversion 3.1.5-GCCcore-10.2.0
Doxygen 1.8.20-GCCcore-10.2.0
dplyr 1.0.6-foss-2020b-R-4.0.3
ecCodes 2.20.0-gompi-2020b
eccodes-python 1.1.0-foss-2020b
Eigen 3.3.9-GCCcore-10.2.0
Eigen 3.3.8-GCCcore-10.2.0
Elmer-FEM 9.0-foss-2020b
emcee 3.0.2-foss-2020b
erfa 20210727-GCCcore-10.2.0
ESMF 8.0.1-iomkl-2020b
ESMF 8.0.1-foss-2020b
ESMPy 8.0.1-foss-2020b
esoreflex 2.11.5-foss-2020b
esorex 3.13.5-foss-2020b
espdr 2.3.3-foss-2020b
expat 2.2.9-GCCcore-10.2.0
fastq-join 1.3.1-GCCcore-10.2.0
FASTX-Toolkit 0.0.14-GCC-10.2.0
FFmpeg 4.3.1-GCCcore-10.2.0
FFTW 3.3.8-iompi-2020b
FFTW 3.3.8-gompi-2020b
fgeo 1.1.4-foss-2020b-R-4.0.3
Fiji 20201104-1356
file 5.39-GCCcore-10.2.0
Fiona 1.8.19-foss-2020b
flatbuffers 1.12.0-GCCcore-10.2.0
flatbuffers-python 1.12-GCCcore-10.2.0
flex 2.6.4-GCCcore-10.2.0
flex 2.6.4
flowVS 1.22.4-foss-2020b-R-4.0.3
FLTK 1.3.5-GCCcore-10.2.0
fontconfig 2.13.92-GCCcore-10.2.0-libpng-1.2.58
fontconfig 2.13.92-GCCcore-10.2.0
foss 2020b
freetype 2.10.3-GCCcore-10.2.0-libpng-1.2.58
freetype 2.10.3-GCCcore-10.2.0
FriBidi 1.0.10-GCCcore-10.2.0
fv 5.5.2-foss-2020b
g2clib 1.6.3-GCCcore-10.2.0
g2lib 3.2.0-GCCcore-10.2.0
gasgano 2.4.8-foss-2020b
GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8
GATK 4.2.0.0-GCCcore-10.2.0-Java-11
GCC 10.2.0
GCCcore 10.2.0
GConf 3.2.6-GCCcore-10.2.0
GCPy 1.0.3-foss-2020b
GDAL 3.2.1-foss-2020b
Gdk-Pixbuf 2.40.0-GCCcore-10.2.0
gensim 3.8.3-foss-2020b
geopandas 0.9.0-foss-2020b
GeoRinex 1.16.1-foss-2020b
GEOS 3.9.1-GCC-10.2.0
geoviews 1.9.1-foss-2020b
gettext 0.21-GCCcore-10.2.0
gettext 0.21
ggrepel 0.9.1-foss-2020b-R-4.0.3
Ghostscript 9.53.3-GCCcore-10.2.0
giflib 5.2.1-GCCcore-10.2.0
git 2.28.0-GCCcore-10.2.0-nodocs
GitPython 3.1.14-GCCcore-10.2.0
GLib 2.66.1-GCCcore-10.2.0
GLPK 4.65-GCCcore-10.2.0
GMP 6.2.0-GCCcore-10.2.0
gnuplot 5.4.1-GCCcore-10.2.0
GObject-Introspection 1.66.1-GCCcore-10.2.0
gompi 2020b
GPArotation 2014.11-1-foss-2020b-R-4.0.3
gperf 3.1-GCCcore-10.2.0
Graphviz 2.47.0-GCCcore-10.2.0-Java-11
GROMACS 2021.2-iomkl-2020b
GROMACS 2021.2-foss-2020b
GSL 2.6-iccifort-2020.4.304
GSL 2.6-GCC-10.2.0
GST-plugins-base 1.18.4-GCC-10.2.0
GStreamer 1.18.4-GCC-10.2.0
GTK+ 3.24.23-GCCcore-10.2.0
GTS 0.7.6-GCCcore-10.2.0
gzip 1.10-GCCcore-10.2.0
h5py 3.1.0-foss-2020b
h5py 2.10.0-foss-2020b
HarfBuzz 2.6.7-GCCcore-10.2.0
harmony 1.0.0-20201009-foss-2020b-R-4.0.3
Hatanaka 2.8.0-foss-2020b
HDF 4.2.15-GCCcore-10.2.0
HDF5 1.10.7-iompi-2020b
HDF5 1.10.7-gompi-2020b
HDF-EOS 2.20-GCCcore-10.2.0
HDF-EOS5 1.16-gompi-2020b
help2man 1.47.4
help2man 1.47.16-GCCcore-10.2.0
holoviews 1.14.3-foss-2020b
HPL 2.3-iomkl-2020b
HPL 2.3-foss-2020b
HTSlib 1.11-GCC-10.2.0
hwloc 2.2.0-GCCcore-10.2.0
hyperopt 0.2.5-foss-2020b
hypervolume 2.0.12-foss-2020b-R-4.0.3
hypothesis 5.41.5-GCCcore-10.2.0
hypothesis 5.41.2-GCCcore-10.2.0
iccifort 2020.4.304
ICU 67.1-GCCcore-10.2.0
igraph 0.9.1-foss-2020b
ImageMagick 7.0.10-35-GCCcore-10.2.0
imkl 2020.4.304-iompi-2020b
impi 2019.12.320-iccifort-2020.4.304
intltool 0.51.0-GCCcore-10.2.0
IOHexperimenter 0.2.9.2-foss-2020b
iomkl 2020b
iompi 2020b
ipdb 0.13.9-GCCcore-10.2.0
IPO 1.16.0-foss-2020b
IPython 7.18.1-GCCcore-10.2.0
IRkernel 1.2-foss-2020b-R-4.0.3
iterative-Random-Forest 0.2.5-foss-2020b
JASPAR2020 0.99.10-foss-2020b-R-4.0.3
JasPer 2.0.24-GCCcore-10.2.0
Java 1.8.0_292-OpenJDK
Java 1.8.0_281
Java 1.8
Java 13.0.2
Java 11.0.2
Java 11
jbigkit 2.1-GCCcore-10.2.0
jemalloc 5.2.1-GCCcore-10.2.0
JsonCpp 1.9.4-GCCcore-10.2.0
JupyterLab 2.2.8-GCCcore-10.2.0
kableExtra 1.3.4-foss-2020b-R-4.0.3
kim-api 2.2.1-GCCcore-10.2.0
king 2.2.7-foss-2020b
LAME 3.100-GCCcore-10.2.0
LAMMPS 29Oct2020-foss-2020b-kokkos
leidenalg 0.8.3-foss-2020b
libarchive 3.4.3-GCCcore-10.2.0
libcerf 1.14-GCCcore-10.2.0
libdrm 2.4.102-GCCcore-10.2.0-libpng-1.2.58
libdrm 2.4.102-GCCcore-10.2.0
libepoxy 1.5.4-GCCcore-10.2.0
libevent 2.1.12-GCCcore-10.2.0
libfabric 1.11.0-GCCcore-10.2.0
libffi 3.3-GCCcore-10.2.0
libgcrypt 1.9.2-GCCcore-10.2.0
libgd 2.3.0-GCCcore-10.2.0
libgeotiff 1.6.0-GCCcore-10.2.0
libGLU 9.0.1-GCCcore-10.2.0
libglvnd 1.3.2-GCCcore-10.2.0
libgpg-error 1.41-GCCcore-10.2.0
libiconv 1.16-GCCcore-10.2.0
Libint 2.6.0-iccifort-2020.4.304-lmax-6-cp2k
Libint 2.6.0-GCC-10.2.0-lmax-6-cp2k
libjpeg-turbo 2.0.5-GCCcore-10.2.0
libpciaccess 0.16-GCCcore-10.2.0
libpng 1.6.37-GCCcore-10.2.0
libpng 1.2.58-GCCcore-10.2.0
libpsl 0.21.1-GCCcore-10.2.0
libreadline 8.0-GCCcore-10.2.0
libsigsegv 2.13-GCCcore-10.2.0
libsndfile 1.0.28-GCCcore-10.2.0
libsodium 1.0.18-GCCcore-10.2.0
LibSoup 2.74.0-GCCcore-10.2.0
LIBSVM 3.25-GCCcore-10.2.0
libtasn1 4.16.0-GCCcore-10.2.0
libtecla 1.6.3-GCCcore-10.2.0
LibTIFF 4.1.0-GCCcore-10.2.0
libtirpc 1.3.1-GCCcore-10.2.0
libtool 2.4.6-GCCcore-10.2.0
libunwind 1.4.0-GCCcore-10.2.0
libwebp 1.1.0-GCCcore-10.2.0
libxc 4.3.4-iccifort-2020.4.304
libxc 4.3.4-GCC-10.2.0
libxml2 2.9.10-GCCcore-10.2.0
libxslt 1.1.34-GCCcore-10.2.0
libxsmm 1.16.1-iccifort-2020.4.304
libxsmm 1.16.1-GCC-10.2.0
libyaml 0.2.5-GCCcore-10.2.0
LittleCMS 2.11-GCCcore-10.2.0
LLVM 11.0.0-GCCcore-10.2.0
LLVM 10.0.1-GCCcore-10.2.0
LMDB 0.9.24-GCCcore-10.2.0
LS-DYNA 11.2.2-iccifort-2020.4.304
Lua 5.4.2-GCCcore-10.2.0
lxml 4.6.3-GCCcore-10.2.0
lz4 1.9.2-GCCcore-10.2.0
LZO 2.10-GCCcore-10.2.0
M4 1.4.18-GCCcore-10.2.0
M4 1.4.18
makedepend 1.0.6-GCCcore-10.2.0
Mako 1.1.3-GCCcore-10.2.0
MALLET 202108
MashMap 20210721-foss-2020b
MATLAB 2021b
matplotlib 3.3.3-foss-2020b
Maude 3.1-GCCcore-10.2.0
mechanize 0.4.7-GCCcore-10.2.0
Mercurial 5.7.1-GCCcore-10.2.0
Mesa 20.2.1-GCCcore-10.2.0-libpng-1.2.58-dri
Mesa 20.2.1-GCCcore-10.2.0
Meson 0.55.3-GCCcore-10.2.0
METIS 5.1.0-GCCcore-10.2.0
MOFA2 1.0.1-foss-2020b-R-4.0.3
mofapy2 0.5.7-foss-2020b
molmod 1.4.5-foss-2020b
Mono 6.12.0.122-GCCcore-10.2.0
Monocle3 1.0.0-foss-2020b-R-4.0.3
motifmatchr 1.12.0-foss-2020b-R-4.0.3
MPFR 4.1.0-GCCcore-10.2.0
msigdbr 7.4.1-foss-2020b
MUMPS 5.3.5-foss-2020b-metis
mxfold2 0.1.1-foss-2020b-PyTorch-1.7.1
NASM 2.15.05-GCCcore-10.2.0
ncbi-vdb 2.10.9-gompi-2020b
ncdf4 1.17-foss-2020b-R-4.0.3
NCL 6.6.2-foss-2020b
ncurses 6.2-GCCcore-10.2.0
ncurses 6.2
netCDF 4.7.4-iompi-2020b
netCDF 4.7.4-gompi-2020b
netcdf4-python 1.5.5.1-foss-2020b
netCDF-C++4 4.3.1-iompi-2020b
netCDF-C++4 4.3.1-gompi-2020b
netCDF-Fortran 4.5.3-iompi-2020b
netCDF-Fortran 4.5.3-gompi-2020b
nettle 3.6-GCCcore-10.2.0
networkx 2.5-foss-2020b
nevergrad 0.4.3.post4-foss-2020b
NGS 2.10.9-GCCcore-10.2.0
Ninja 1.10.1-GCCcore-10.2.0
NLopt 2.6.2-GCCcore-10.2.0
nodejs 14.16.1-GCCcore-10.2.0
nodejs 12.19.0-GCCcore-10.2.0
NSPR 4.29-GCCcore-10.2.0
NSS 3.57-GCCcore-10.2.0
nsync 1.24.0-GCCcore-10.2.0
numactl 2.0.13-GCCcore-10.2.0
numba 0.53.1-foss-2020b
numba 0.52.0-foss-2020b
openair 2.8-3-foss-2020b-R-4.0.3
OpenBLAS 0.3.12-GCC-10.2.0
OpenCV 4.5.1-foss-2020b-contrib
OpenEXR 2.5.5-GCCcore-10.2.0
OpenJPEG 2.4.0-GCCcore-10.2.0
OpenMC 0.12.1-foss-2020b
OpenMPI 4.0.5-iccifort-2020.4.304
OpenMPI 4.0.5-GCC-10.2.0
OpenPGM 5.2.122-GCCcore-10.2.0
OSU-Micro-Benchmarks 5.6.3-iompi-2020b
OSU-Micro-Benchmarks 5.6.3-gompi-2020b
Pango 1.47.0-GCCcore-10.2.0
parallel 20210322-GCCcore-10.2.0
ParaView 5.9.1
pathos 0.2.7-foss-2020b
PCRE 8.44-GCCcore-10.2.0
PCRE2 10.35-GCCcore-10.2.0
PEAR 0.9.11-GCCcore-10.2.0
Perl 5.32.0-GCCcore-10.2.0
Pillow 8.0.1-GCCcore-10.2.0
Pillow-SIMD 7.1.2-GCCcore-10.2.0
pixman 0.40.0-GCCcore-10.2.0
pkg-config 0.29.2-GCCcore-10.2.0
pkgconfig 1.5.1-GCCcore-10.2.0-python
plotly.py 4.14.3-GCCcore-10.2.0
PLUMED 2.6.2-iomkl-2020b
PLUMED 2.6.2-foss-2020b
PostgreSQL 13.2-GCCcore-10.2.0
prepareGenFromBeagle4 20210920-foss-2020b
PROJ 7.2.1-GCCcore-10.2.0
protobuf 3.14.0-GCCcore-10.2.0
protobuf-python 3.14.0-GCCcore-10.2.0
pybind11 2.6.0-GCCcore-10.2.0
PyCairo 1.20.0-GCCcore-10.2.0
PyCharm 2021.2
pyfits 3.5-foss-2020b
pymap3d 2.7.2-foss-2020b
PyMC3 3.11.1-foss-2020b
pyproj 3.0.1-foss-2020b
PyQt5 5.15.1-GCCcore-10.2.0
pyro-api 0.1.2-foss-2020b
pyro-ppl 1.5.2-foss-2020b
PyTables 3.6.1-foss-2020b
Python 3.8.6-GCCcore-10.2.0
Python 2.7.18-GCCcore-10.2.0
python-cdo 1.5.6-foss-2020b
python-igraph 0.9.0-foss-2020b
PyTorch 1.7.1-foss-2020b
PyYAML 5.3.1-GCCcore-10.2.0
PyZMQ 22.1.0-GCCcore-10.2.0
Qt 4.8.7
Qt5 5.14.2-GCCcore-10.2.0
R 4.0.3-foss-2020b
R-bundle-Bioconductor 3.12-foss-2020b-R-4.0.3
re2c 2.0.3-GCCcore-10.2.0
RELION 3.1.2-foss-2020b
request 2.88.1-foss-2020b-nodejs-12.19.0
ResMap 1.1.4
rgdal 1.5-18-foss-2020b-R-4.0.3
rgeos 0.5-5-foss-2020b-R-4.0.3
RStudio-Server 1.4.1717-foss-2020b-Java-11-R-4.0.3
RStudio-Server 1.3.1093-foss-2020b-Java-11-R-4.0.3
Ruby 2.7.2-GCCcore-10.2.0
Salmon 1.5.2-gompi-2020b
SAMtools 1.11-GCC-10.2.0
sars 1.3.5-foss-2020b-R-4.0.3
sars 1.3.4-foss-2020b-R-4.0.3
ScaFaCoS 1.0.1-foss-2020b
ScaLAPACK 2.1.0-gompi-2020b
scikit-build 0.11.1-foss-2020b
scikit-learn 0.23.2-foss-2020b
SciPy-bundle 2020.11-iomkl-2020b
SciPy-bundle 2020.11-foss-2020b
SCons 4.0.1
SCOTCH 6.1.0-gompi-2020b
SDL2 2.0.14-GCCcore-10.2.0
Seaborn 0.11.1-foss-2020b
Seurat af2925c-foss-2020b-R-4.0.3
Seurat 4.0.4-foss-2020b-R-4.0.3
SeuratWrappers 20210730-foss-2020b-R-4.0.3
sf 1.0-0-foss-2020b-R-4.0.3
SHAPEIT4 4.2.1-foss-2020b
Shapely 1.7.1-GCC-10.2.0
Signac 1.3.0-foss-2020b-R-4.0.3
Signac 1.2.1-foss-2020b-R-4.0.3-Seurat-af2925c
SingCellaR 1.2.0-foss-2020b-R-4.0.3
snappy 1.1.8-GCCcore-10.2.0
SOCI 4.0.1-GCC-10.2.0
Spark 3.1.1-foss-2020b
SQLite 3.33.0-GCCcore-10.2.0
SRA-Toolkit 2.10.9-gompi-2020b
Stack 2.7.3-x86_64
statsmodels 0.12.1-foss-2020b
strelka 2.9.10-foss-2020b-Python-2.7.18
SWIG 4.0.2-GCCcore-10.2.0
Szip 2.1.1-GCCcore-10.2.0
Tamarin_prover 1.6.1-GCCcore-10.2.0
Taxonstand 2.3-foss-2020b-R-4.0.3
tbb 2020.3-GCCcore-10.2.0
Tcl 8.6.10-GCCcore-10.2.0
tcsh 6.22.03-GCCcore-10.2.0
tensorboardX 2.4-foss-2020b-PyTorch-1.7.1
TFBSTools 1.28.0-foss-2020b-R-4.0.3
Theano 1.1.2-foss-2020b-PyMC
TIE-GCM 2.0-iomkl-2020b-Python-2.7.18
TIE-GCM 2.0-foss-2020b-Python-2.7.18
time 1.9-GCCcore-10.2.0
Tk 8.6.10-GCCcore-10.2.0
Tkinter 3.8.6-GCCcore-10.2.0
Topaz 0.2.4-foss-2020b-PyTorch-1.7.1
torchvision 0.8.2-foss-2020b-PyTorch-1.7.1
tqdm 4.56.2-GCCcore-10.2.0
typing-extensions 3.7.4.3-GCCcore-10.2.0
UCX 1.9.0-GCCcore-10.2.0
UDUNITS 2.2.26-GCCcore-10.2.0
umap-learn 0.4.6-foss-2020b
uncertainties 3.1.5-foss-2020b
UnZip 6.0-GCCcore-10.2.0
util-linux 2.36-GCCcore-10.2.0
VASP 5.4.4-iomkl-2020b-ISIF8
VASP 5.4.4-iomkl-2020b
vasprun-xml 1.0.4-foss-2020b
visdom 0.1.8.9-foss-2020b
Voro++ 0.4.6-GCCcore-10.2.0
VSEARCH 2.21.1-GCC-10.2.0
VTK 9.0.1-foss-2020b
wcslib 7.6-GCCcore-10.2.0
WebKitGTK+ 2.27.4-GCC-10.2.0
WPS 4.2-foss-2020b-dmpar
WRF 4.2.2-foss-2020b-hydro
WRF 4.2.2-foss-2020b-dmpar-vortex
WRF 4.2.2-foss-2020b-dmpar
WRF-Hydro 5.1.1-foss-2020b
wxPython 4.1.1-foss-2020b
wxWidgets 3.1.4-GCC-10.2.0
X11 20201008-GCCcore-10.2.0-libpng-1.2.58
X11 20201008-GCCcore-10.2.0
x264 20201026-GCCcore-10.2.0
x265 3.3-GCCcore-10.2.0
xarray 0.16.2-foss-2020b
xESMF 0.3.0-foss-2020b
xorg-macros 1.19.2-GCCcore-10.2.0
xpa 2.1.20-foss-2020b
xprop 1.2.5-GCCcore-10.2.0
xproto 7.0.31-GCCcore-10.2.0
Xvfb 1.20.9-GCCcore-10.2.0
XZ 5.2.5-GCCcore-10.2.0
yaff 1.6.0-foss-2020b
Yasm 1.3.0-GCCcore-10.2.0
YAXT 0.9.0-gompi-2020b
Yices 2.6.2-GCCcore-10.2.0
Z3 4.8.10-GCCcore-10.2.0
ZeroMQ 4.3.3-GCCcore-10.2.0
Zip 3.0-GCCcore-10.2.0
zlib 1.2.11-GCCcore-10.2.0
zlib 1.2.11
zstd 1.4.5-GCCcore-10.2.0