Seurat 4.0.4-foss-2020b-R-4.0.3

Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data.

Accessing Seurat 4.0.4-foss-2020b-R-4.0.3

To load the module for Seurat 4.0.4-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Seurat/4.0.4-foss-2020b-R-4.0.3

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • Matrix-1.3-4
  • Rcpp 1.0.7
  • Seurat 4.0.4
  • SeuratObject 4.0.2
  • spatstat.core-2.3-0
  • spatstat.data-2.1-0
  • spatstat.geom-2.2-2
  • spatstat.sparse-2.0-0
  • spatstat.utils-2.2-0

More Information

For more information visit the Seurat website.

Dependencies

This version of Seurat has a direct dependency on: foss/2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3

Required By

This version of Seurat is a direct dependent of: Signac/1.3.0-foss-2020b-R-4.0.3

Other Versions

These versions of Seurat are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th September 2021