Seurat 5.0.0-foss-2022b-R-4.3.1

Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data.

Accessing Seurat 5.0.0-foss-2022b-R-4.3.1

To load the module for Seurat 5.0.0-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load Seurat/5.0.0-foss-2022b-R-4.3.1

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • Azimuth 0.5.0
  • BPCells 0.1.0
  • cli 3.6.2
  • crayon 1.5.2
  • glmGamPoi 1.14.2
  • hdf5r 1.3.9
  • Matrix-1.6-1.1
  • presto 1.0.0
  • R6 2.5.1
  • rlang 1.1.3
  • scattermore 1.2
  • sctransform 0.4.1
  • Seurat 5.0.0
  • SeuratData 0.2.1
  • SeuratDisk 0.0.0.9015
  • SeuratObject 5.0.0
  • SeuratWrappers 20210721
  • Signac 1.11.0
  • SoupX 1.6.1
  • sp-1.5-1
  • spatstat.data-3.0-0
  • spatstat.explore-3.0-5
  • spatstat.geom-3.0-3
  • spatstat.random-3.0-1
  • spatstat.sparse-3.0-0
  • spatstat.utils-3.0-1
  • stringi 1.8.3
  • uwot 0.1.16
  • withr 3.0.0

More Information

For more information visit the Seurat website.

Dependencies

This version of Seurat has a direct dependency on: foss/2022b R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1

Other Versions

These versions of Seurat are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th February 2024