There is a newer version of SeuratSeurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data.
Accessing Seurat 3.2.0-foss-2019b-R-3.6.2
To load the module for Seurat 3.2.0-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Seurat/3.2.0-foss-2019b-R-3.6.2
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- dqrng 0.2.1
- future 1.17.0
- future.apply 1.5.0
- leiden 0.3.3
- patchwork 1.0.0
- RcppAnnoy 0.0.16
- RcppParallel 5.0.1
- rsvd 1.0.3
- sctransform 0.2.1
- Seurat 3.2.0
- sitmo 2.0.1
- uwot 0.1.8
For more information visit the Seurat website.
This version of Seurat has a direct dependency on: foss/2019b R/3.6.2-foss-2019b
This version of Seurat is a direct dependent of: DoubletFinder/20200901-foss-2019b-R-3.6.2 Signac/1.0.0-foss-2019b-R-3.6.2 SoupX/1.4.8-foss-2019b-R-3.6.2
These versions of Seurat are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 5th October 2020