SoupX 1.4.8-foss-2019b-R-3.6.2

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) .

Accessing SoupX 1.4.8-foss-2019b-R-3.6.2

To load the module for SoupX 1.4.8-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SoupX/1.4.8-foss-2019b-R-3.6.2

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

SoupX 1.4.8

More Information

For more information visit the SoupX website.

Dependencies

This version of SoupX has a direct dependency on: foss/2019b R/3.6.2-foss-2019b Seurat/3.2.0-foss-2019b-R-3.6.2

Last modified on 13th November 2020