There is a newer version of SignacA framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis.
Accessing Signac 1.2.1-foss-2020b-R-4.0.3-Seurat-af2925c
To load the module for Signac 1.2.1-foss-2020b-R-4.0.3-Seurat-af2925c please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Signac/1.2.1-foss-2020b-R-4.0.3-Seurat-af2925c
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- docopt 0.7.1
- ggseqlogo 0.1
- lsa 0.73.2
- qlcMatrix 0.9.7
- Signac 1.2.1
- sparsesvd 0.2
For more information visit the Signac website.
This version of Signac has a direct dependency on: foss/2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3 Seurat/af2925c-foss-2020b-R-4.0.3
These versions of Signac are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 28th May 2021