VSEARCH 2.21.1-GCC-10.2.0

VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.

Accessing VSEARCH 2.21.1-GCC-10.2.0

To load the module for VSEARCH 2.21.1-GCC-10.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load VSEARCH/2.21.1-GCC-10.2.0

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the VSEARCH website.

Dependencies

This version of VSEARCH has a direct dependency on: bzip2/1.0.8-GCCcore-10.2.0 GCC/10.2.0 zlib/1.2.11-GCCcore-10.2.0

Last modified on 21st March 2022