SRA-Toolkit 2.10.9-gompi-2020b

There is a newer install of SRA-Toolkit

The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format

Accessing SRA-Toolkit 2.10.9-gompi-2020b

To load the module for SRA-Toolkit 2.10.9-gompi-2020b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SRA-Toolkit/2.10.9-gompi-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SRA-Toolkit website.

Dependencies

This version of SRA-Toolkit has a direct dependency on: file/5.39-GCCcore-10.2.0 gompi/2020b HDF5/1.10.7-gompi-2020b libxml2/2.9.10-GCCcore-10.2.0 NGS/2.10.9-GCCcore-10.2.0

Other Versions

These versions of SRA-Toolkit are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 23rd September 2022