prepareGenFromBeagle4 20210920-foss-2020b

This program merges all the VCFs produced by Beagle4 in step 3 and produces proper whole chromosome input files for SHAPEIT.

Accessing prepareGenFromBeagle4 20210920-foss-2020b

To load the module for prepareGenFromBeagle4 20210920-foss-2020b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load prepareGenFromBeagle4/20210920-foss-2020b

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the prepareGenFromBeagle4 website.


This version of prepareGenFromBeagle4 has a direct dependency on: Boost/1.74.0-GCC-10.2.0 foss/2020b

Last modified on 30th September 2021