SComatic 20231025-foss-2020b-R-4.0.3

SComatic is a tool that provides functionalities to detect somatic single-nucleotide mutations in high-throughput single-cell genomics and transcriptomics data sets, such as single-cell RNA-seq and single-cell ATAC-seq.

Accessing SComatic 20231025-foss-2020b-R-4.0.3

To load the module for SComatic 20231025-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SComatic/20231025-foss-2020b-R-4.0.3

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• about-time-3.1.1
• beniget 0.4.1
• Cython 0.29.24
• gast 0.5.3
• numpy 1.21.6
• numpy-groupies-0.9.14
• pandas 1.3.5
• ply 3.11
• pythran 0.10.0
• rpy2 2.9.4
• scipy 1.7.3

More Information

For more information visit the SComatic website.

Dependencies

This version of SComatic has a direct dependency on: BEDTools/2.30.0-GCC-10.2.0 datamash/1.8-GCCcore-10.2.0 foss/2020b pybedtools/0.8.1-GCC-10.2.0 pybind11/2.6.0-GCCcore-10.2.0 Pysam/0.16.0.1-GCC-10.2.0 Python/3.8.6-GCCcore-10.2.0 R/4.0.3-foss-2020b SAMtools/1.11-GCC-10.2.0

Last modified on 20th December 2023