prepareGenFromBeagle4This program merges all the VCFs produced by Beagle4 in step 3 and produces proper whole chromosome input files for SHAPEIT.
For more information visit the prepareGenFromBeagle4 website.
These versions of prepareGenFromBeagle4 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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