PyEnsembl 2.0.1-foss-2021b

Python interface to access reference genome features (such as genes, transcripts and exons) from Ensembl.

Accessing PyEnsembl 2.0.1-foss-2021b

To load the module for PyEnsembl 2.0.1-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load PyEnsembl/2.0.1-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • datacache 1.1.5
  • gtfparse 1.2.1
  • memoized-property-1.0.3
  • progressbar33 2.4
  • PyEnsembl 2.0.1
  • serializable 0.2.1
  • tinytimer 20150320
  • typechecks 0.1.0

More Information

For more information visit the PyEnsembl website.

Dependencies

This version of PyEnsembl has a direct dependency on: foss/2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of PyEnsembl is a direct dependent of: Bisbee/20210108-foss-2021b-R-4.2.0

Last modified on 7th October 2022