aicsimageio 4.9.4-foss-2021b

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python

Accessing aicsimageio 4.9.4-foss-2021b

To load the module for aicsimageio 4.9.4-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load aicsimageio/4.9.4-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • aicsimageio 4.9.4
  • aicspylibczi 3.1.0
  • autoflake 2.0.2
  • bfio 2.3.0
  • bioformats-jar-2020.5.27
  • black 23.1.0
  • editables 0.3
  • elementpath 2.5.3
  • fsspec 2022.11.0
  • hatch-fancy-pypi-readme-22.8.0
  • hatch-vcs-0.3.0
  • hatchling 1.13.0
  • imagecodecs 2023.1.23
  • imageio-ffmpeg-0.4.8
  • isort 5.12.0
  • jgo 1.0.5
  • JPype1 1.4.1
  • lxml 4.9.2
  • mrc 0.3.0
  • mypy-extensions-1.0.0
  • nd2 0.5.3
  • numpydoc 1.4.0
  • ome-types-0.3.3
  • ome-zarr-0.2.1
  • pathspec 0.11.1
  • Pint 0.20.1
  • pydantic 1.9.1
  • pyflakes 3.0.1
  • readlif 0.6.5
  • resource-backed-dask-array-0.1.0
  • scyjava 1.8.1
  • setuptools 61.3.1
  • tifffile 2023.2.3
  • tomli 2.0.1
  • wrapt 1.14.0
  • wurlitzer 3.0.3
  • xmlschema 1.4.1

More Information

For more information visit the aicsimageio website.

Dependencies

This version of aicsimageio has a direct dependency on: aiohttp/3.8.1-GCCcore-11.2.0 dask/2022.1.0-foss-2021b foss/2021b imageio/2.13.5-foss-2021b Java/11 lxml/4.6.3-GCCcore-11.2.0 Maven/3.6.3 Pillow/8.3.2-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 scikit-image/0.19.1-foss-2021b SciPy-bundle/2021.10-foss-2021b typing-extensions/3.10.0.2-GCCcore-11.2.0 xarray/0.20.1-foss-2021b zarr/2.13.3-foss-2021b

Last modified on 28th March 2023